SCIENTIFIC PUBLICATIONS
Scientific publications by IAGE or co-authored by IAGE employees, covering numerous areas of application for IAGE technologies: human epidemiology, epizootics, hospital hygiene, agriculture, soil health, etc.
Tracking the urban spread of Usutu virus in southern France: Detection across biological and environmental matricesRachel Beaubaton, Justine Revel, Laetitia Pigeyre, Karine Bollore, Alexandre Lepeule, Julien Mocq, Christophe de Franceschi, Julien Pradel, Yvon Perrin, David Gomis, Marie Ducousso, Laurie Virolle, Baptiste Chenet, Guillaume Castel, Anne Charmantier, Nathalie Charbonnel, Guillaume Lacour, Olivier Courot, Antoine Mignotte, Yannick SimoninPLOS – Neglected Tropical Diseases • September 2, 2025
Could the load of carbapenemase genes in hospital wastewater be a proxy for the epidemiology of emerging resistance to carbapenems in humans? - PreprintCamille Favier, Mylène Toubiana, Isabelle Zorgniotti, Olivier Courot, Franz Durandet, Patricia Licznar-Fajardo, Estelle Jumas-BilakmedRχiv • September 1, 2025
D genome acquisition and breeding have had a significant impact on interaction of wheat with ACC deaminase producers in soil or ACC deaminase potential activity in the rhizosphereGruet C, Abrouk D, Börner A, Muller D, Moënne-Loccoz Y, Soil Biology and Biochemistry, Volume 193, 2024, 109392, ISSN 0038-0717Soil Biology and Biochemistry • June 1, 2024
Highly pathogenic avian influenza A (H5N1) clade 2.3.4.4b virus infection in captive bears (Ursus thibetanus) and in captive and wild birds, France, 2022Briand FX, Beltrame M, Guillemoto C, Busson R, Pigeyre L, Beven V, Fleten A, Orosco R, Daniel P, Palumbo L, Joris A, Blanchard T, Simonin Y, Ger. J. Vet. Res 2024. vol. 4, Iss. 1 pp:77-82German Journal of Veterinary Research • April 19, 2024
Monitoring the threatened Harttiella (Siluriformes, Loricariidae) with environmental DNA: A comparison between metabarcoding and targeted digital PCRCondachou C, Cuenot Y, Pigeyre L, Covain R, Brosse S & Murienne J (2024). Aquatic Conservation: Marine and Freshwater Ecosystems, 34(2), e4111.Aquatic Conservation • February 20, 2024
Etude de l'antibiorésistance émergente à l'hôpital de Montpellier par une approche d'épidémiologie basée sur les eaux uséesFavier C, Toubiana M, Zorgniotti I, Courot O, Licznar-Fajardo P, et al, 33ème congrès de la société française d'hygiène hospitalière, SF2H, May 2023, Lille, France.Société française d'hygiène hospitalière (Congrès) • May 1, 2023
Epidemic modeling with heterogeneity and social diffusionBerestycki H, Desjardins B, Weitz JS, Oury J-M, Journal of Mathematical Biology, no 4, Vol 86, 2023Journal of Mathematical Biology • March 25, 2023
Wild type and variants of SARS-COV-2 in Parisian sewage: presence in raw water and through processes in wastewater treatment plantsLopez Viveros M, Azimi S, Pichon E, Rose-Amsaleg C, Bize A, Durandet F, Environmental Science and Pollution Research, 2022, 29:67442-67449Environmental Science and Pollution Research • August 27, 2022
Plateaus, rebounds and the effects of individual behaviours in epidemicsBerestycki H, Desjardins B, Heintz B, Oury J-M, Sci Rep 11, 18339 (2021).Scientific Report • September 15, 2021
- Efficient Genome Editing in Rice Protoplasts Using CRISPR/CAS9 ConstructBes M, Herbert L, Mounier T, Meunier A-C, Durandet F, Guiderdoni E, Périn C (2021), In: Bandyopadhyay A., Thilmony R. (eds) Rice Genome Engineering and Gene Editing. Methods in Molecular Biology, Vol. 2238. Humana, New-York NY.
Springer Nature • January 21, 2021
- A fast, efficient and high-throughput procedure involving laser microdissection and RT droplet digital PCR for tissue-specific expression profiling of rice rootsThibault Mounier, Sergi Navarro-Sanz, Charlotte Bureau, Lefeuvre Antoine, Fabrice Varoquaux, Franz Durandet & Christophe Périn
Springer Nature • October 12, 2020
Environmental DNA for detecting Bulinus truncatus: A new environmental surveillance tool for schistosomiasis emergence risk assessmentMulero S, Boissier J, Allienne J-F, Quilichini Y, Foata J, Pointier J-P, Rey O, Environmental DNA (APR 2020), Vol. 2, No. 2, pp. 161-174(citation de la participation de F. Durandet de la société IAGE pour la réalisation d’analyses de PCR digitale)Wiley Online Library • November 26, 2019
- Comparison of prominent Azospirillum strains in Azospirillum–Pseudomonas–Glomus consortia for promotion of maize growthCourot O, Poirier MA, Prigent-Combaret C, Mavingui P, Caballero-Mellado J, Moënne-Loccoz Y. (2010), Assessment of SCAR markers to design real-time PCR primers for rhizosphere quantification of Azospirillum brasilense phytostimulatory inoculants of maize, Journal of Applied Microbiology, Vol. 109, pp. 528-538.
Springer Nature • July 18, 2012
- Development of a real-time PCR method to quantify the PGPR strain Azospirillum lipoferum CRT1 on maize seedlingsCourot O, Bouffaud ML, Muller D, Caballero-Mellado J and Moënne-Loccoz Y, (2010), Soil Biology and Biochemistry, Vol. 42, no. 12, pp. 2298-2305, ISSN 0038-0717
Soil Biology and Biochemistry • September 1, 2010
Assessment of SCAR markers to design real‐time PCR primers for rhizosphere quantification of Azospirillum brasilense phytostimulatory inoculants of maizeCourot O, Poirier MA, Prigent-Combaret C, Mavingui P, Caballero-Mellado J, Moënne-Loccoz Y. (2010), Journal of Applied Microbiology, Vol. 109, pp. 528-538Journal of Applied Microbiology • August 10, 2010
- Applicability of the 16S–23S rDNA internal spacer for PCR detection of the phytostimulatory PGPR inoculant Azospirillum lipoferum CRT1 in field soilBaudoin E, Courot O, Spaepen S, Moënne-Loccoz Y and Nazaret S, (2010), Journal of Applied Microbiology, Vol. 108, pp. 25-38.
Journal of Applied Microbiology • January 1, 2010